🧬 Protein Design 🛡️ Immunology
Stephen Zhewen Lu, Aakarsh Vermani, Kohei Sanno, Jiarui Lu +3
Common deep learning approaches for antibody engineering focus on modeling the marginal distribution of sequences. By treating sequences as independent samples, however, these…
🛡️ Immunology
Paul Collart, Juergen Gall, Andrea Schnepf, Holger Pagel +1
Soil microorganisms control organic matter cycling and largely determine how soil systems can cope with and mitigate climate change and environmental threats. Representing…
🛡️ Immunology
Boqiao Lai, Melissa Englund, Ramit Bharanikumar, Isabel Nocedal +3
Modeling recognition between T-cell receptors (TCRs) and peptide-MHC (pMHC) complexes is a fundamental challenge in computational immunology, constrained by sparse paired…
🧬 Protein Design 🛡️ Immunology
Haoyang Luan, Gufeng Yu, Letian Chen, Zhenran Xiao +3
The *de novo* generation of high-affinity epitopes tailored to specific major histocompatibility complex (MHC) proteins is a pivotal challenge in computational immunotherapy.…
🧬 Protein Design 🛡️ Immunology
Jeonghyeon Kim, Nathaniel Blalock, Ameya Kulkarni, Kensuke Nakamura +1
Antibodies originate from germline templates and are diversified by somatic hypermutation, producing sequences in which conserved germline residues scaffold structure while rare…
🏥 Clinical & Healthcare 🛡️ Immunology
Yang Song, Yixuan Zhang, Lingfa Meng, Tongyuan Hu +4
Parameter-efficient adaptation has made LLMs practical for domain prediction, but standard LoRA still relies on a static low-rank update and does not expose the latent…
🧬 Protein Design 🛡️ Immunology
Xiang Fang, Wanlong Fang, Wei Ji
Large Vision-Language Models have achieved unprecedented success in zero-shot recognition by aligning visual features with broad semantic concepts. However, this semantic…
🧬 Protein Design 🛡️ Immunology
Josh Qixuan Sun, Morteza Babaie, Wenyang hou, Mark Crowley +1
Antibody expression ranking is a critical task in antibody design, yet its modelling is severely hindered by the scarcity of labeled experimental data. To address this, we propose…