Research · Skill set · 6 skills
Bio research
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D
Open in PhởSkills in this set
- Instrument Data to Allotrope Converter
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to…
- nf-core Pipeline Deployment
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets…
- Scientific Problem Selection Skills
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this…
- scvi-tools Deep Learning Skill
Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq…
- Single-Cell RNA-seq Quality Control
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users…
- Bio-Research Start
Set up your bio-research environment and explore available tools. Use when first getting oriented with the plugin, checking which literature, drug-discovery, or visualization MCP…
Other research sets
Frequently asked questions
What is in the Bio research skill set?
6 skills: Instrument Data to Allotrope Converter, nf-core Pipeline Deployment, Scientific Problem Selection Skills, scvi-tools Deep Learning Skill, Single-Cell RNA-seq Quality Control, Bio-Research Start.
Is the Bio research skill set free?
Yes. It is published by Anthropic under the Apache 2.0 licence and works with a free Phở account.
How do I add Bio research to Phở?
Press Open in Phở and add the set once. From then on Phở picks the right skill from it whenever a request matches.
Copied unchanged from anthropics/knowledge-work-plugins at commit d900840 and credited to Anthropic, who is not affiliated with Phở. The full instructions and licence text ship with the skill inside Phở.