JanusPipe: Efficient Pipeline Parallel Training for Machine Learning Interatomic Potentials
Hongyu Wang, Weijian Liu, Hongtao Xu, Yan Wang, Mingzhen Li, Weile Jia, Guangming Tan
ICML 2026 regular
Abstract (source: OpenReview · © authors)
Discovering atom-level phenomena requires molecular dynamics (MD) simulations with ab initio accuracy. Machine learning interatomic potentials (MLIPs) enable stable, high-accuracy MD simulations, and their models exhibit scaling-law trends similar to large language models. However, the lack of scalable and efficient distributed training systems for conservative MLIPs makes them difficult to scale. This is because conservative MLIPs inherently follow a double-backward execution pattern, which involves computing gradients during the forward pass. This pattern creates a mismatch with existing distributed training systems, especially for pipeline parallelism. Therefore, we present JanusPipe, an efficient 3D-parallel (PP/DP/GP) training system tailored for conservative MLIPs. It integrates SymFold to enable memory-efficient pipeline parallelism for conservative MLIPs, and WaveK to reduce pipeline bubbles by balancing the four-phase compute time. Experimental results on 32 GPUs show that JanusPipe improves throughput by $1.51\times$ and $1.45\times$ on average over 1F1B and Hanayo, respectively.
Keywords
Metadata from BioTender-max/icml2026-ai-bio (CC0-1.0). Phở does not host any PDF; links point back to the source.
Related
Towards Sub-Second Molecular Docking as a Structural Primitive: A Quantized Consistency Diffusion Framework
Kexin Zhang, Weichen Qin, Yue Teng, Jiale Yu +4
Agent-centered scientific discovery is turning scientific models into always-on computational infrastructure. In this paradigm, AI agents coordinate tools, interpret feedback, and…
A Call to Lagrangian Action: Learning Population Mechanics from Temporal Snapshots
Vincent Guan, Lazar Atanackovic, Kirill Neklyudov
The population dynamics of molecules, cells, and organisms are governed by a number of unknown internal and external forces. In the last decade, population dynamics have…
DeCoDe: Decoupling Binding Position and Molecular Conformation in 3D Ligand Diffusion for Structure-Based Drug Design
Julong Yang, Wen Huang, Junhui Chen, Jian Peng
Recent advances in diffusion models show promise for Structure-Based Drug Design (SBDD), which aims to generate 3D ligand molecules that bind tightly to specific protein targets.…